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descriptionGraph database interfaces in Python
homepage URLhttp://bioinformatics.ucla.edu/pygr
ownerleec@chem.ucla.edu
last changeThu, 10 Sep 2009 08:44:00 +0000 (10 01:44 -0700)
URLgit://repo.or.cz/pygr.git
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readme

Pygr is an open source software project used to develop graph database interfaces for the popular Python language, with a strong emphasis on bioinformatics applications ranging from genome-wide analysis of alternative splicing patterns, to comparative genomics queries of multi-genome alignment data.

Please see our http://code.google.com/p/pygr/wiki/PygrDocumentation Google Code Wiki for tutorials, module documentation, recipes, and forum. NOTE: to build Pygr from this source repository, you need Pyrex (downloadable from http://www.cosc.canterbury.ac.nz/greg.ewing/python/Pyrex/) and a C compiler usable with Python distutils.
shortlog
2009-09-10 Christopher Leeprotect mysql tests using mysql_enabled()master commit | commitdiff | tree | snapshot (tar.gz zip)
2009-09-10 Christopher Leeprotected some blast tests commit | commitdiff | tree | snapshot (tar.gz zip)
2009-09-10 Christopher Leeadded comment commit | commitdiff | tree | snapshot (tar.gz zip)
2009-09-10 Christopher Leeimproved iterator trapping tests commit | commitdiff | tree | snapshot (tar.gz zip)
2009-09-10 Christopher Leemade SQLTableClustered use standard iterator methods... commit | commitdiff | tree | snapshot (tar.gz zip)
2009-09-10 Christopher Leechanged BlockGenerator to select multiple columns at... commit | commitdiff | tree | snapshot (tar.gz zip)
2009-09-10 Christopher Leeadded support for new iteration approach to SQLTableMul... commit | commitdiff | tree | snapshot (tar.gz zip)
2009-09-10 Christopher LeeMerge commit 'remotes/ctb/tutorial' into tryme commit | commitdiff | tree | snapshot (tar.gz zip)
2009-09-10 Christopher LeeMerge commit 'remotes/ctb/xmlrpc_patches' into tryme commit | commitdiff | tree | snapshot (tar.gz zip)
2009-09-10 Christopher Leeadded order-by pickling test commit | commitdiff | tree | snapshot (tar.gz zip)
2009-09-10 Christopher Leeadded SQLTable pickle test commit | commitdiff | tree | snapshot (tar.gz zip)
2009-09-10 Christopher Leeadded tests w/o serverSideCursors or blockIterators commit | commitdiff | tree | snapshot (tar.gz zip)
2009-09-10 Christopher Leeadded serverSideCursors and blockIterators options commit | commitdiff | tree | snapshot (tar.gz zip)
2009-09-10 Christopher Leeexpanded random value order by test commit | commitdiff | tree | snapshot (tar.gz zip)
2009-09-09 Christopher LeeMerge commit 'remotes/mkszuba/sqltable_orderby' into... commit | commitdiff | tree | snapshot (tar.gz zip)
2009-09-09 Christopher Leeadded SQLTable_Test.test_orderBy() commit | commitdiff | tree | snapshot (tar.gz zip)
...
heads
14 years ago master log | tree
14 years ago tutorial log | tree
15 years ago v0_7 log | tree
16 years ago origin log | tree
16 years ago leec log | tree
19 years ago leelab log | tree
Graph database interfaces in Python